•   About
  •   Heatmap Panel
  •     Showing data for:

Heatmap Data
















Icon
Name
Chevron

Pathomap: Discovering the Microbiome of NYC

  •  About the project
  •  Contact us
  •  Attributions

Pathomap project aims to identify and map the microbiome of NYC.


www.pathomap.org

www.masonlab.net/

Map and website by: Cem Meydan


Please cite:

Ebrahim Afshinnekoo and Cem Meydan et al., Geospatial Resolution of Human and Bacterial Diversity with City-Scale Metagenomics, CELS (2015), http://dx.doi.org/10.1016/j.cels.2015.01.001

Main paper at Cell Systems (pdf)

Supplemental Information (zip, 100mb)

Raw Data

WSJ article about the project

WSJ visualization of the data

This website uses the following:

  • Leaflet for mapping
  • Heatmap.js for heatmaps (with thanks to Patrick Wied for his help)
  • Bootleaf as the main theme.
  • typeahead.js for feature search with autocomplete.
  • Leaflet marker cluster plugin for marker clustering.
  • Map tiles by Stamen Design, OpenStreetMap Sweden, OpenCycleMap, CartoDB and Esri.
  • Map data by OpenStreetMap.
  • MTA Subway data courtesy of the CUNY Mapping Service at the Center for Urban Research

The data provided on this site is for informational purposes only.

Absolutely no accuracy or completeness guarantee is implied or intended.

Please email:

  • Christopher E. Mason, chm2042 (at) med.cornell.edu for general questions about the project.
  • Cem Meydan, cem2009 (at) med.cornell.edu, for questions/problems about the analysis/visualizations.

Pathomap website uses leaflet.js, heatmap.js and Bootleaf. Bootleaf developed by bryanmcbride.com